Index

_

_get_comp_slice() (emsa.model.matrix_generator.MatrixGenerator method)

_get_end_state() (emsa.model.matrix_generator.MatrixGenerator method) _get_trans_param_dict() (emsa.model.matrix_generator.MatrixGenerator method)

A

aggregate_by_age() (emsa.model.model_base.EpidemicModelBase method)

B

basic_ode() (emsa.model.epidemic_model.EpidemicModel method)

C

c_idx (emsa.model.matrix_generator.MatrixGenerator attribute) calculate_all_p_values() (emsa.utils.simulation_base.SimulationBase method) calculate_all_prcc() (emsa.utils.simulation_base.SimulationBase method) calculate_p_values() (emsa.utils.simulation_base.SimulationBase method)

calculate_prcc() (emsa.utils.simulation_base.SimulationBase method) cm (emsa.model.matrix_generator.MatrixGenerator attribute) construct_triangle_grid() (in module emsa.utils.plotter) create_latin_table() (in module emsa.sensitivity.sampler_base)

D

data (emsa.model.matrix_generator.MatrixGenerator attribute)

DataLoaderBase (class in emsa.utils.dataloader) device (emsa.model.matrix_generator.MatrixGenerator attribute)

E

emsa.model.epidemic_model module emsa.model.matrix_generator module emsa.model.model_base module emsa.model.r0_calculator module emsa.sensitivity.prcc module emsa.sensitivity.sampler_base module emsa.sensitivity.sensitivity_model_base module

emsa.sensitivity.target_calc.output_generator module emsa.sensitivity.target_calc.r0_calculator_lhs module emsa.sensitivity.target_calc.sol_based_target_calc module emsa.utils.dataloader module emsa.utils.plotter module emsa.utils.simulation_base module EpidemicModel (class in emsa.model.epidemic_model) EpidemicModelBase (class in emsa.model.model_base)

F

flatten_dict() (emsa.utils.simulation_base.SimulationBase method)

flatten_dict_in_dict() (emsa.utils.simulation_base.SimulationBase static method) flatten_list_in_dict() (emsa.utils.simulation_base.SimulationBase static method)

G

generate_3D_matrices() (emsa.sensitivity.sensitivity_model_base.SensitivityModelBase method) generate_matrix() (emsa.model.matrix_generator.MatrixGenerator method) generate_tornado_plot() (in module emsa.utils.plotter) generate_transition_block() (in module emsa.model.matrix_generator) generate_transition_matrix() (in module emsa.model.matrix_generator) get_A() (emsa.model.matrix_generator.MatrixGenerator method) get_age_groups() (in module emsa.utils.plotter) get_B() (emsa.model.matrix_generator.MatrixGenerator method) get_basic_ode() (emsa.sensitivity.sensitivity_model_base.SensitivityModelBase method) get_batch_solution() (emsa.sensitivity.target_calc.sol_based_target_calc.TargetCalc method) get_beta_from_r0() (emsa.utils.simulation_base.SimulationBase method) get_compartments() (emsa.model.model_base.EpidemicModelBase method) get_eig_val() (emsa.model.r0_calculator.R0Generator method) get_end_state() (emsa.model.matrix_generator.MatrixGenerator method) get_filename() (emsa.utils.simulation_base.SimulationBase method) get_inf_mul() (in module emsa.model.matrix_generator) get_infected_states() (emsa.model.r0_calculator.R0Generator method) get_initial_values() (emsa.sensitivity.sensitivity_model_base.SensitivityModelBase method) get_initial_values_from_dict() (emsa.model.model_base.EpidemicModelBase method) get_lhs_dict() (in module emsa.sensitivity.sensitivity_model_base)

get_lhs_table() (emsa.sensitivity.sampler_base.SamplerBase method) get_matrix_from_lhs() (emsa.sensitivity.sensitivity_model_base.SensitivityModelBase method) get_mul_method() (emsa.sensitivity.sensitivity_model_base.SensitivityModelBase static method) get_output() (emsa.sensitivity.target_calc.output_generator.OutputGenerator method) (emsa.sensitivity.target_calc.r0_calculator_lhs.R0CalculatorLHS method) (emsa.sensitivity.target_calc.sol_based_target_calc.TargetCalc method) get_param_mul() (in module emsa.model.matrix_generator) get_params_col_idx() (in module emsa.sensitivity.sensitivity_model_base) get_prcc_and_p_values() (in module emsa.utils.plotter) get_prcc_values() (in module emsa.sensitivity.prcc) get_sim_output() (emsa.sensitivity.sampler_base.SamplerBase method) get_sol_from_ode() (emsa.model.model_base.EpidemicModelBase method) get_solution() (emsa.model.epidemic_model.EpidemicModel method) (emsa.model.model_base.EpidemicModelBase method) get_substates() (in module emsa.model.model_base) get_susc_mul() (in module emsa.model.matrix_generator) get_T() (emsa.model.matrix_generator.MatrixGenerator method) get_true_finished() (emsa.sensitivity.target_calc.sol_based_target_calc.TargetCalc method) get_V_1() (emsa.model.matrix_generator.MatrixGenerator method) get_V_2() (emsa.model.matrix_generator.MatrixGenerator method)

I

idx (emsa.model.matrix_generator.MatrixGenerator attribute) idx() (emsa.model.model_base.EpidemicModelBase method)

initialize_matrices() (emsa.model.model_base.EpidemicModelBase method) isinf_state() (emsa.model.r0_calculator.R0Generator method)

L

lhs_bounds_dict (emsa.sensitivity.sampler_base.SamplerBase attribute)

M

MatrixGenerator (class in emsa.model.matrix_generator) max_metric() (emsa.sensitivity.target_calc.sol_based_target_calc.TargetCalc method) max_stopping_condition() (emsa.sensitivity.target_calc.sol_based_target_calc.TargetCalc method) merge_dicts() (emsa.utils.simulation_base.SimulationBase static method) module emsa.model.epidemic_model emsa.model.matrix_generator emsa.model.model_base emsa.model.r0_calculator emsa.sensitivity.prcc emsa.sensitivity.sampler_base emsa.sensitivity.sensitivity_model_base emsa.sensitivity.target_calc.output_generator emsa.sensitivity.target_calc.r0_calculator_lhs emsa.sensitivity.target_calc.sol_based_target_calc emsa.utils.dataloader emsa.utils.plotter emsa.utils.simulation_base

N

n_age (emsa.model.matrix_generator.MatrixGenerator attribute) (emsa.utils.dataloader.DataLoaderBase property)

n_comp (emsa.model.matrix_generator.MatrixGenerator attribute) n_eq (emsa.model.matrix_generator.MatrixGenerator attribute)

O

OutputGenerator (class in emsa.sensitivity.target_calc.output_generator)

P

parse_param_name() (emsa.utils.simulation_base.SimulationBase static method) plot_all_prcc() (emsa.utils.simulation_base.SimulationBase method) plot_prcc() (emsa.utils.simulation_base.SimulationBase method)

plot_prcc_p_values_as_heatmap() (in module emsa.utils.plotter) population (emsa.model.matrix_generator.MatrixGenerator attribute) process_variable_params() (emsa.utils.simulation_base.SimulationBase method) ps (emsa.model.matrix_generator.MatrixGenerator attribute)

R

R0CalculatorLHS (class in emsa.sensitivity.target_calc.r0_calculator_lhs) R0Generator (class in emsa.model.r0_calculator) run() (emsa.sensitivity.sampler_base.SamplerBase method)

run_func_for_all_configs() (emsa.utils.simulation_base.SimulationBase method) run_sampling() (emsa.sensitivity.sampler_base.SamplerBase method) (emsa.utils.simulation_base.SimulationBase method)

S

SamplerBase (class in emsa.sensitivity.sampler_base) save_finished_indices() (emsa.sensitivity.target_calc.sol_based_target_calc.TargetCalc method) save_output() (emsa.sensitivity.sampler_base.SamplerBase method) save_output_for_finished() (emsa.sensitivity.target_calc.sol_based_target_calc.TargetCalc method) SensitivityModelBase (class in emsa.sensitivity.sensitivity_model_base) sim_object (emsa.sensitivity.sampler_base.SamplerBase attribute) (emsa.sensitivity.target_calc.r0_calculator_lhs.R0CalculatorLHS attribute)

SimulationBase (class in emsa.utils.simulation_base) state_data (emsa.model.matrix_generator.MatrixGenerator attribute) sup_metric() (emsa.sensitivity.target_calc.sol_based_target_calc.TargetCalc method) sup_stopping_condition() (emsa.sensitivity.target_calc.sol_based_target_calc.TargetCalc method) susceptibles (emsa.utils.simulation_base.SimulationBase property)

T

TargetCalc (class in emsa.sensitivity.target_calc.sol_based_target_calc)

tms_rules (emsa.model.matrix_generator.MatrixGenerator attribute) trans_data (emsa.model.matrix_generator.MatrixGenerator attribute)

V

validate_params() (emsa.model.model_base.EpidemicModelBase method)

visualize_transmission_graph() (emsa.model.model_base.EpidemicModelBase method) (in module emsa.utils.plotter)